
Selected Publications full list below
• H. Giaffar, S. Shuvaev, D. Rinberg, A. Koulakov 2024
The primacy model and the structure of olfactory space
PLOS Computational Biology https://doi.org/10.1371/journal.pcbi.1012379 also at Biorxiv
• H. Nakayama, R.C. Gerkin, D. Rinberg 2022
A behavioral paradigm for measuring perceptual distances in mice
Cell Reports Methods, https://doi.org/10.1101/255661 - also at Biorxiv
• E. Shor, P. Herrero-Vidal, A. Dewan, I. Uguz, V. Curto, G. Malliaras, C. Savin, T. Bozza, D. Rinberg 2022
Sensitive and robust chemical detection using an olfactory brain-computer interface
Biosensors and Bioelectronics, https://doi.org/10.1016/j.bios.2021.113664 - also at Biorxiv
• P. Herrero-Vidal, D. Rinberg, C. Savin 2021
Across-animal odor decoding by probabilistic manifold alignment
Advances in Neural Information Processing Systems - also at Biorxiv
• J.V. Gill, G. Lerman, H. Zhao, B. Stetler, D. Rinberg, S. Shoham 2020
Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Feature Determining Perceptual Detection
Neuron, https://doi.org/10.1016/j.neuron.2020.07.034 - also at Biorxiv
• E. Chong, M. Moroni, C.D. Wilson, S. Shoham, S. Panzeri, D. Rinberg 2020
Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception
Science, doi: 10.1126/science.aba2357 - also at BioRxiv
• E.M. Arneodo, K.B. Penikis, N. Rabinowitz, A. Licata, A. Cichy, J. Zhang, T. Bozza, and D. Rinberg 2018
Stimulus dependent diversity and stereotypy in the output of an olfactory
functional unit
Nature Communication, doi: 10.1038/s41467-018-03837-1 - also at Biorxiv
• C.D. Wilson, G.O. Serrano, A.A. Koulakov, and D. Rinberg 2017
A primacy code for odor identity
Nature Communication, doi: 10.1038/s41467-017-01432-4 - also at Biorxiv
• M. Smear, R. Shusterman, R. O’Connor, T. Bozza, and D. Rinberg 2011
Perception of sniff phase in mouse olfaction
Nature, doi: 10.1038/nature10521 (reviewed at Faculty 1000)
• R. Shusterman, M. Smear, A. Koulakov, and D. Rinberg 2011
Precise olfactory responses tile the sniff cycle
Nature Neuroscience, doi: 10.1038/nn.2877 (reviewed at Faculty 1000)
• A. Koulakov, and D. Rinberg 2011
Sparse incomplete representations: A novel role for olfactory granule cells
Neuron, doi: 10.1016/j.neuron.2011.07.031
• D. Rinberg, A. Koulakov, and A. Gelperin 2006
Sparse odor coding in behaving mice
J. Neuroscience, doi: https://doi.org/10.1523/JNEUROSCI.0884-06.2006
• D. Rinberg, A. Koulakov, and A. Gelperin 2006
Speed accuracy tradeoff in olfaction
Neuron, doi: 10.1016/j.neuron.2006.07.013
• A. Koulakov, D. Rinberg, and D.N. Tsigankov 2004
How to find decision makers in neural circuits?
Biological Cybernetics, doi: 10.1007/s00422-005-0022-z
Public talks
2023:
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Dima Rinberg joined Vasant Dhar in episode 62 of Brave New World to discuss what he has learnt about the neurobiology of smell over the last two decades. Enjoy!
2020:
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Edmund Chong, “Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception”. COSYNE 2020, Denver, CO
2018:
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Dima Rinberg , "What the nose knows", KITP Blackboard Lunch. Workshop "Neural computations for sensory navigation: mechanisms, models, and biomimetic applications", The Kavli Institute for Theoretical Physics, University California Santa Barbara, CA
2015:
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Dima Rinberg, "Odor Coding". Workshop “Deconstructing the Sense of Smell”. The Kavli Institute for Theoretical Physics, University California Santa Barbara, CA
Full publication list:
• V. Agarwal, J.S. Harvey, D. Rinberg, V. Dhar
Data Science in Olfaction at Biorxiv
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S. Karimimehr and D. Rinberg 2024
Timing matters in olfaction
Nature Human Behaviour https://doi.org/10.1038/s41562-024-02008-1
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H. Giaffar, S. Shuvaev, D. Rinberg, A. Koulakov 2024
The primacy model and the structure of olfactory space
Plos Computational Biology, https://doi.org/10.1371/journal.pcbi.1012379 (earlier version at Biorxiv)
-
H. Nakayama, R.C. Gerkin, D. Rinberg 2022
A behavioral paradigm for measuring perceptual distances in mice
Cell Reports Methods, https://doi.org/10.1101/255661 (earlier version at Biorxiv)
-
E. Shor, P. Herrero-Vidal, A. Dewan, I. Uguz, V. Curto, G. Malliaras, C. Savin, T. Bozza, D. Rinberg 2022
Sensitive and robust chemical detection using an olfactory brain-computer interface.
Biosensors and Bioelctronicns, https://doi.org/10.1016/j.bios.2021.113664 (earlier version at BioRxiv)
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J. Harvey and D. Rinberg 2021
Olfaction: Source separation in a single sniff
Current Biology, https://doi.org/10.1016/j.cub.2021.07.010
• P. Herrero-Vidal, D. Rinberg, C. Savin 2021
Across-animal odor decoding by probabilistic manifold alignment
Advances in Neural Information Processing Systems - also at Biorxiv
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J.V. Gill, G. Lerman, H. Zhao, B. Stetler, D. Rinberg, S. Shoham 2020
Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Feature Determining Perceptual Detection
Neuron, https://doi.org/10.1016/j.neuron.2020.07.034 (earlier versions at Biorxiv)
-
E. Chong, M. Moroni, C.D. Wilson, S. Shoham, S. Panzeri, D. Rinberg 2020
Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception.
Science, doi: 10.1126/science.aba2357 (earlier versions at BioRxiv)
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G.M. Lerman, J.P. Little, J.V. Gill, D. Rinberg, S. Shoham 2019
Real‐Time In Situ Holographic Optogenetics Confocally Unraveled Sculpting Microscopy
Laser & Photonics Reviews, doi: https://doi.org/10.1002/lpor.201900144
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A. Williams, B. Poole, N. Maheswaranathan, K. Dhawale, T. Fisher, C.D. Wilson, D.H. Brann, E. Trautmann, S. Ryu, R. Shusterman, R. Rinberg, B.P. Ölveczky, K.V. Shenoy, S. Ganguli 2019
Discovering precise temporal patterns in large-scale neural recordings through robust and interpretable time warping
Neuron, https://doi.org/10.1016/j.neuron.2019.10.020 (earlier versions at Biorxiv)
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D.R. Kepple, H. Giaffar, D. Rinberg, A.A. Koulakov 2019
Deconstructing Odorant Identity via Primacy in Dual Networks
Neural Compuation, doi: 10.1162/neco_a_01175
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R. Shusterman, Y.B. Sirotin, M.C. Smear, Y. Ahmadian, D. Rinberg 2018
Sniff invariant odor coding
eNeuro, doi: 10.1523/ENEURO.0149-18.2018 (also at Bioarxiv)
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A. Dewan, A. Cichy, J. Zhang, K. Miguel, P. Feinstein, D. Rinberg, T. Bozza 2018
Single olfactory receptors set odor detection thresholds
Nature Communication, doi: 10.1038/s41467-018-05129-0 (also at Biorxiv)
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E. Chong & D. Rinberg 2018
Behavioral readout of spatio-temporal codes in olfaction
Curr Opin Neurobiol, https://doi.org/10.1016/j.conb.2018.04.008
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E.M. Arneodo, K.B. Penikis, N. Rabinowitz, A. Licata, A. Cichy, J. Zhang, T. Bozza, and D. Rinberg 2018
Stimulus dependent diversity and stereotypy in the output of an olfactory functional unit
Nature Communication, doi: 10.1038/s41467-018-03837-1 (also at Biorxiv)
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C.D. Wilson, G.O. Serrano, A.A. Koulakov, and D. Rinberg 2017
A primacy code for odor identity
Nature Communication, doi: 10.1038/s41467-017-01432-4 (also at Biorxiv)
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Y.B. Sirotin, R. Shusterman, and D. Rinberg 2015
Neural coding of perceived odor intensity
eNeuro, doi: 10.1523/ENEURO.0083-15.2015
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A. Resulaj & D. Rinberg D. 2015
Novel Behavioral Paradigm Reveals Lower Temporal Limits on Mouse Olfactory Decisions
J. Neuroscience, doi: 10.1523/JNEUROSCI.4693-14.2015 (reviewed at Faculty 1000)
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Sanders H, Kolterman BE, Shusterman R, Rinberg D, Koulakov A, and Lisman J. 2014
A network that performs brute-force conversion of a temporal sequence to a spatial pattern: relevance to odor recognition
Front Comput Neuroscience, doi: 10.3389/fncom.2014.00108
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Devore S, and Rinberg D. 2014
Dark matter of the bulb
Nature Neuroscience, doi:10.1038/nn.3684
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Reisert J, Golden GJ, Matsumura K, Smear M, Rinberg D, and Gelperin A. 2014
Comparing thoracic and intra-nasal pressure transients to monitor active odor sampling during odor-guided decision making in the mouse
J. Neurosci. Methods, doi: 10.1016/j.jneumeth.2013.09.006
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Dewan A, Pacifico R, Zhan R, Rinberg D, and Bozza T. 2013
Non-redundant coding of aversive odours in the main olfactory pathway
Nature, doi: 10.1038/nature12114 (reviewed at Faculty 1000)
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Smear M, Resulaj A, Zhang J, Bozza T, and Rinberg D. 2013
Multiple perceptible signals from a single olfactory glomerulus
Nature Neuroscience, doi: 10.1038/nn.3519 (reviewed at Faculty 1000)
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Spors H, Albeanu DF, Murthy V, Rinberg D, Uchida N, Wachowiak M, and Friedrich RW. 2012
Illuminating Vertebrate Olfactory Processing
J. Neuroscience, doi: 10.1523/JNEUROSCI.3328-12.2012
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Smear M, Shusterman R, O’Connor R, Bozza T, and Rinberg D. 2011
Perception of sniff phase in mouse olfaction
Nature, doi: 10.1038/nature10521 (reviewed at Faculty 1000)
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Shusterman R, Smear M, Koulakov A, and Rinberg D. 2011
Precise olfactory responses tile the sniff cycle
Nature Neuroscience, doi: 10.1038/nn.2877 (reviewed at Faculty 1000)
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Koulakov A and Rinberg D. 2011
Sparse incomplete representations: A novel role for olfactory granule cells
Neuron, doi: 10.1016/j.neuron.2011.07.031
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Koulakov A, Kolterman BE, Enikolopov A, and Rinberg D. 2011
In search of the structure of human olfactory space
Frontiers in System Neuroscience, doi: 10.3389/fnsys.2011.00065
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Katz DB, Matsunami H, Rinberg D, Scott K, Wachowiak M, and Wilson RI. 2008
Receptors, Circuits, and Behaviors: New Directions in Chemical Senses
J. Neuroscience, doi: 10.1523/JNEUROSCI.3613-08.2008
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Koulakov A, Gelperin A, and Rinberg D. 2007
Olfactory coding with all-or-nothing glomeruli
J. Neurophysiology, doi: 10.1152/jn.00560.2007
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Rinberg D, Koulakov A, and Gelperin A. 2006
Sparse odor coding in behaving mice
J. Neuroscience, doi: https://doi.org/10.1523/JNEUROSCI.0884-06.2006
-
Rinberg D, Koulakov A, and Gelperin A. 2006
Speed accuracy tradeoff in olfaction
Neuron, doi: 10.1016/j.neuron.2006.07.013
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Rinberg D and Gelperin A. 2006
Olfactory neuronal dynamics in behaving animals
Seminars in Cell and Development biology, doi: 10.1016/j.semcdb.2006.04.009
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Koulakov A, Rinberg D, and Tsigankov DN. 2005
How to find decision makers in neural circuits?
Biological Cybernetics, doi: 10.1007/s00422-005-0022-z
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Rinberg D, Simonnet C, and Groisman A. 2005
Pneumatic capillary gun for ballistic delivery of microparticles
Applied Physics Letters, https://doi.org/10.1063/1.1951044