Publications 2024_08

Selected Publications full list below

2023

H. Giaffar, S. Shuvaev, D. Rinberg, A. Koulakov

The primacy model and the structure of olfactory space

Biorxiv, (earlier version is at here)

2022

H. Nakayama, R.C. Gerkin, D. Rinberg

A behavioral paradigm for measuring perceptual distances in mice

Cell Reports Methods, https://doi.org/10.1101/255661 (earlier version at Biorxiv)

E. Shor, P. Herrero-Vidal, A. Dewan, I. Uguz, V. Curto, G. Malliaras, C. Savin, T. Bozza, D. Rinberg

Sensitive and robust chemical detection using an olfactory brain-computer interface

Biosensors and Bioelctronicns, https://doi.org/10.1016/j.bios.2021.113664 (earlier version at BioRxiv)

2021

J. Harvey and D. Rinberg

Olfaction: Source separation in a single sniff

Current Biology, https://doi.org/10.1016/j.cub.2021.07.010

2020

J.V. Gill, G. Lerman, H. Zhao, B. Stetler, D. Rinberg, S. Shoham

Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Feature Determining Perceptual Detection

Neuron, https://doi.org/10.1016/j.neuron.2020.07.034 (earlier versions at Biorxiv)

E. Chong, M. Moroni, C.D. Wilson, S. Shoham, S. Panzeri, D. Rinberg

Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception

Science, doi: 10.1126/science.aba2357 (earlier versions at BioRxiv)

2018

E. Chong & D. Rinberg

Behavioral readout of spatio-temporal codes in olfaction

Curr Opin Neurobiol, https://doi.org/10.1016/j.conb.2018.04.008

E.M. Arneodo, K.B. Penikis, N. Rabinowitz, A. Licata, A. Cichy, J. Zhang, T. Bozza, and D. Rinberg

Stimulus dependent diversity and stereotypy in the output of an olfactory

functional unit

Nature Communication, doi: 10.1038/s41467-018-03837-1 (also at Biorxiv)

2017

C.D. Wilson, G.O. Serrano, A.A. Koulakov, and D. Rinberg

A primacy code for odor identity

Nature Communication, doi: 10.1038/s41467-017-01432-4 (also at Biorxiv)

2014

Devore S, and Rinberg D.

Dark matter of the bulb

Nature Neuroscience, doi:10.1038/nn.3684

2013

Dewan A, Pacifico R, Zhan R, Rinberg D, and Bozza T.

Non-redundant coding of aversive odours in the main olfactory pathway

Nature, doi: 10.1038/nature12114 (reviewed at Faculty 1000)

2012

Spors H, Albeanu DF, Murthy V, Rinberg D, Uchida N, Wachowiak M, and Friedrich RW.

Illuminating Vertebrate Olfactory Processing

J. Neuroscience, doi: 10.1523/JNEUROSCI.3328-12.2012

2011

Smear M, Shusterman R, O’Connor R, Bozza T, and Rinberg D.

Perception of sniff phase in mouse olfaction

Nature, doi: 10.1038/nature10521 (reviewed at Faculty 1000)

Shusterman R, Smear M, Koulakov A, and Rinberg D.

Precise olfactory responses tile the sniff cycle

Nature Neuroscience, doi: 10.1038/nn.2877 (reviewed at Faculty 1000)

2006

Rinberg D, Koulakov A, and Gelperin A.

Sparse odor coding in behaving mice

J. Neuroscience, doi: https://doi.org/10.1523/JNEUROSCI.0884-06.2006

Rinberg D, Koulakov A, and Gelperin A.

Speed accuracy tradeoff in olfaction

Neuron, doi: 10.1016/j.neuron.2006.07.013

Rinberg D and Gelperin A.

Olfactory neuronal dynamics in behaving animals

Seminars in Cell and Development biology, doi: 10.1016/j.semcdb.2006.04.009

2005

Koulakov A, Rinberg D, and Tsigankov DN.

How to find decision makers in neural circuits?

Biological Cybernetics, doi: 10.1007/s00422-005-0022-z

Public talks

2023:

Dima Rinberg joined Vasant Dhar in episode 62 of Brave New World to discuss what he has learnt about the neurobiology of smell over the last two decades. Enjoy!

2020:

Edmund Chong, “Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception”. COSYNE 2020, Denver, CO

2018:

Dima Rinberg , "What the nose knows", KITP Blackboard Lunch. Workshop "Neural computations for sensory navigation: mechanisms, models, and biomimetic applications", The Kavli Institute for Theoretical Physics, University California Santa Barbara, CA

2015:

Dima Rinberg, "Odor Coding". Workshop “Deconstructing the Sense of Smell”. The Kavli Institute for Theoretical Physics, University California Santa Barbara, CA

Full publication list:

H. Giaffar, S. Shuvaev, D. Rinberg, A. Koulakov 2023

The primacy model and the structure of olfactory space

Biorxiv, (earlier version is at here)

H. Nakayama, R.C. Gerkin, D. Rinberg 2022

A behavioral paradigm for measuring perceptual distances in mice

Cell Reports Methods, https://doi.org/10.1101/255661 (earlier version at Biorxiv)

E. Shor, P. Herrero-Vidal, A. Dewan, I. Uguz, V. Curto, G. Malliaras, C. Savin, T. Bozza, D. Rinberg 2022

Sensitive and robust chemical detection using an olfactory brain-computer interface.

Biosensors and Bioelctronicns, https://doi.org/10.1016/j.bios.2021.113664 (earlier version at BioRxiv)

J. Harvey and D. Rinberg 2021

Olfaction: Source separation in a single sniff

Current Biology, https://doi.org/10.1016/j.cub.2021.07.010

J.V. Gill, G. Lerman, H. Zhao, B. Stetler, D. Rinberg, S. Shoham 2020

Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Feature Determining Perceptual Detection

Neuron, https://doi.org/10.1016/j.neuron.2020.07.034 (earlier versions at Biorxiv)

E. Chong, M. Moroni, C.D. Wilson, S. Shoham, S. Panzeri, D. Rinberg 2020

Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception.

Science, doi: 10.1126/science.aba2357 (earlier versions at BioRxiv)

G.M. Lerman, J.P. Little, J.V. Gill, D. Rinberg, S. Shoham 2019

Real‐Time In Situ Holographic Optogenetics Confocally Unraveled Sculpting Microscopy

Laser & Photonics Reviews, doi: https://doi.org/10.1002/lpor.201900144

A. Williams, B. Poole, N. Maheswaranathan, K. Dhawale, T. Fisher, C.D. Wilson, D.H. Brann, E. Trautmann, S. Ryu, R. Shusterman, R. Rinberg, B.P. Ölveczky, K.V. Shenoy, S. Ganguli 2019

Discovering precise temporal patterns in large-scale neural recordings through robust and interpretable time warping

Neuron, https://doi.org/10.1016/j.neuron.2019.10.020 (earlier versions at Biorxiv)

D.R. Kepple, H. Giaffar, D. Rinberg, A.A. Koulakov 2019

Deconstructing Odorant Identity via Primacy in Dual Networks

Neural Compuation, doi: 10.1162/neco_a_01175

R. Shusterman, Y.B. Sirotin, M.C. Smear, Y. Ahmadian, D. Rinberg 2018

Sniff invariant odor coding

eNeuro, doi: 10.1523/ENEURO.0149-18.2018 (also at Bioarxiv)

A. Dewan, A. Cichy, J. Zhang, K. Miguel, P. Feinstein, D. Rinberg, T. Bozza 2018

Single olfactory receptors set odor detection thresholds

Nature Communication, doi: 10.1038/s41467-018-05129-0 (also at Biorxiv)

E. Chong & D. Rinberg 2018

Behavioral readout of spatio-temporal codes in olfaction

Curr Opin Neurobiol, https://doi.org/10.1016/j.conb.2018.04.008

E.M. Arneodo, K.B. Penikis, N. Rabinowitz, A. Licata, A. Cichy, J. Zhang, T. Bozza, and D. Rinberg 2018

Stimulus dependent diversity and stereotypy in the output of an olfactory functional unit

Nature Communication, doi: 10.1038/s41467-018-03837-1 (also at Biorxiv)

C.D. Wilson, G.O. Serrano, A.A. Koulakov, and D. Rinberg 2017

A primacy code for odor identity

Nature Communication, doi: 10.1038/s41467-017-01432-4 (also at Biorxiv)

Y.B. Sirotin, R. Shusterman, and D. Rinberg 2015

Neural coding of perceived odor intensity

eNeuro, doi: 10.1523/ENEURO.0083-15.2015

A. Resulaj & D. Rinberg D. 2015

Novel Behavioral Paradigm Reveals Lower Temporal Limits on Mouse Olfactory Decisions

J. Neuroscience, doi: 10.1523/JNEUROSCI.4693-14.2015 (reviewed at Faculty 1000)

Sanders H, Kolterman BE, Shusterman R, Rinberg D, Koulakov A, and Lisman J. 2014

A network that performs brute-force conversion of a temporal sequence to a spatial pattern: relevance to odor recognition

Front Comput Neuroscience, doi: 10.3389/fncom.2014.00108

Devore S, and Rinberg D. 2014

Dark matter of the bulb

Nature Neuroscience, doi:10.1038/nn.3684

Reisert J, Golden GJ, Matsumura K, Smear M, Rinberg D, and Gelperin A. 2014

Comparing thoracic and intra-nasal pressure transients to monitor active odor sampling during odor-guided decision making in the mouse

J. Neurosci. Methods, doi: 10.1016/j.jneumeth.2013.09.006

Dewan A, Pacifico R, Zhan R, Rinberg D, and Bozza T. 2013

Non-redundant coding of aversive odours in the main olfactory pathway

Nature, doi: 10.1038/nature12114 (reviewed at Faculty 1000)

Smear M, Resulaj A, Zhang J, Bozza T, and Rinberg D. 2013

Multiple perceptible signals from a single olfactory glomerulus

Nature Neuroscience, doi: 10.1038/nn.3519 (reviewed at Faculty 1000)

Spors H, Albeanu DF, Murthy V, Rinberg D, Uchida N, Wachowiak M, and Friedrich RW. 2012

Illuminating Vertebrate Olfactory Processing

J. Neuroscience, doi: 10.1523/JNEUROSCI.3328-12.2012

Smear M, Shusterman R, O’Connor R, Bozza T, and Rinberg D. 2011

Perception of sniff phase in mouse olfaction

Nature, doi: 10.1038/nature10521 (reviewed at Faculty 1000)

Shusterman R, Smear M, Koulakov A, and Rinberg D. 2011

Precise olfactory responses tile the sniff cycle

Nature Neuroscience, doi: 10.1038/nn.2877 (reviewed at Faculty 1000)

Koulakov A and Rinberg D. 2011

Sparse incomplete representations: A novel role for olfactory granule cells

Neuron, doi: 10.1016/j.neuron.2011.07.031

Koulakov A, Kolterman BE, Enikolopov A, and Rinberg D. 2011

In search of the structure of human olfactory space

Frontiers in System Neuroscience, doi: 10.3389/fnsys.2011.00065

Katz DB, Matsunami H, Rinberg D, Scott K, Wachowiak M, and Wilson RI. 2008

Receptors, Circuits, and Behaviors: New Directions in Chemical Senses

J. Neuroscience, doi: 10.1523/JNEUROSCI.3613-08.2008

Koulakov A, Gelperin A, and Rinberg D. 2007

Olfactory coding with all-or-nothing glomeruli

J. Neurophysiology, doi: 10.1152/jn.00560.2007

Rinberg D, Koulakov A, and Gelperin A. 2006